Alumni
The UC San Diego Libraries provide access to official copies of all UC San Diego dissertations. Search the UC San Diego Libraries Catalog for UC San Diego Bioinformatics dissertations.

Andrea Castro
Degree Conferred: Ph.D. Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics
Thesis: Determinants for Effective Neoantigen Based Anti-Tumor Immune Response
Advisor(s): Hannah Carter, Ludmil Alexandrov

Nathaniel Delos Santos
Degree Conferred: Ph.D. Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics
Advisor(s): Christopher Benner, Melissa Gymrek


Argus Athanas-Crannell
Degree Conferred: Ph.D. Bioinformatics and Systems Biology
Thesis: Leveraging Longitudinal Data for Predictive Modeling in Clinical and Mental Health Settings
Advisor(s): Nicholas Schork, Lucila Ohno-Machado

Michelle Dow
Degree Conferred: Ph.D. Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics
Thesis: Integrative Multi-omics Analysis to Understand Cancer and Anticancer Therapy
Advisor(s): Hannah Carter

Yingxiang Huang
Degree Conferred: Ph.D. Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics
Thesis: Preservation of Patient Level Privacy : Federated Classification and Calibration Models
Advisor(s): Lucila Ohno-Machado

Margaret Donovan
Degree Conferred: Ph.D. Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics
Advisor(s): Kelly Frazer

Jing Zhang
Degree Conferred: Ph.D. Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics
Thesis: Supporting Diabetes Patient Decisional Needs Through Online Health Communities
Advisor(s): Vineet Bafna, Michael Hogarth

Stephanie Feudjio Feupe
Degree Conferred: Ph.D. Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics
Thesis: Deep Characterization of the Contribution of Short Tandem Repeats Across Tissues
Advisor(s): Melissa Gymrek, Vineet Bafna

Kemal Eren
Degree Conferred: Ph.D. Bioinformatics and Systems Biology
Advisor(s): Joel Wertheim, Siavash Mirarab

Wei Wei
Degree Conferred: Ph.D. Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics
Thesis: Information Retrieval in Biomedical Research: From Articles to Datasets
Advisor(s): Lucila Ohno-Machado, Xiaoqian Jiang

Eric Levy
Degree Conferred: Ph.D. Bioinformatics and Systems Biology
Thesis: Molecular immune signatures of T-cell infiltration in cancer
Advisor(s): Lucila Ohno-Machado, Olivier Harismendy
Next Position: Personalis, Senior Bioinformatics Scientist