Bioinformatics and Systems Biology Graduate Students

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Ammal Abbasi

Program: Bioinformatics and Systems Biology

Cemil Can Ali Marandi

Program: Bioinformatics and Systems Biology

Maria Luisa Amaral

Program: Bioinformatics and Systems Biology

Advisor(s): Bing Ren

Special Funding/Awards:

2018-21 Trainee on NIH Training Grant in Bioinformatics

Fatemeh Amrollahi

Program: Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics

Ethan Armand

Program: Bioinformatics and Systems Biology

Erick Armingol

Program: Bioinformatics and Systems Biology

Advisor(s): Nathan E. Lewis

Research Interests: Metabolic modeling and multicellular interactions to predict phenotypes

Degrees:

B.S., Molecular Biotechnology, Universidad de Chile, 2013
Engineer in Molecular Biotechnology, Universidad de Chile, 2015

Special Funding/Awards:

2018-22 Becas Chile - CONICYT (Chilean Government Scholarship)
2018-22 Fulbright Scholarship
2023 Siebel Scholar

Website

Jessica Au

Program: Bioinformatics and Systems Biology

Degrees:

B.S., Mathematics and Scientific Computation- Biology emphasis, University of California, Davis, 2017
Minor, Bioinformatics and Quantitative Biology, University of California, Davis, 2017

Hratch Baghdassarian

Program: Bioinformatics and Systems Biology

Advisor(s): Nathan E. Lewis

Research Interests: Cell-Cell Communication; Genome-Scale Modeling; Mammalian Systems Biology

Degrees:

B.S., Bioengineering, University of California, Berkeley, 2017
B.S., Economics, University of California, Berkeley, 2017

Special Funding/Awards:

2018-20 Trainee on NIH Training Grant in Bioinformatics
2022-2023 Oak Ridge Institute for Science and Education (ORISE) Fellowship: Research Participation Program at the U.S. Food and Drug Administration (FDA)

Website

Arjana Begzati

Program: Bioinformatics and Systems Biology

Research Interests: Metabolomics

Degrees:

B.A., Molecular and Cell Biology, University of California, Berkeley, 2019

Dante Bolzan

Program: Bioinformatics and Systems Biology

Special Funding/Awards:

2021-23 Trainee on NIH Training Grant in Bioinformatics

Aaron Boussina

Program: Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics

Special Funding/Awards:

2021-22 Trainee on National Library of Medicine (NLM) Training Grant Fellowship Program

Lauryn Bruce

Program: Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics

Special Funding/Awards:

2020-21 Trainee on National Library of Medicine (NLM) Training Grant Fellowship Program

Yuwei Cao

Program: Bioinformatics and Systems Biology

Owen Chapman

Advisor(s): Jill Mesirov

Degrees:

B.A., Computer Science, Pomona College, 2017

Special Funding/Awards:

2017-20 Trainee on National Library of Medicine (NLM) Training Grant Fellowship Program

Eduardo Charvel

Program: Bioinformatics and Systems Biology

Den Chen

Program: Bioinformatics and Systems Biology

Daisy Chen

Program: Bioinformatics and Systems Biology

Advisor(s): Elizabeth Winzeler

Degrees:

B.S., Computer Science, University of California, Los Angeles, 2021
B.S., Computational and Systems Biology, University of California, Los Angeles, 2021

Special Funding/Awards:

2021-23 Trainee on NIH Training Grant in Bioinformatics

Chien-Ju Chen

Program: Bioinformatics and Systems Biology

Apurva Chitre

Program: Bioinformatics and Systems Biology

Michael Cuoco

Program: Bioinformatics and Systems Biology

Advisor(s): Fred (Rusty) Gage, Eran Mukamel

Research Interests: Genomics approaches to understanding retrotransposon activity in the human brain

Degrees:

B.S., Molecular and Cellular Biology, Trinity College-Connecticut, 2017

Special Funding/Awards:

2020-21 Trainee on NIH Training Grant in Bioinformatics

NSF Graduate Research Fellowship

Website

Jenny Dong

Program: Bioinformatics and Systems Biology

Special Funding/Awards:

2022-23 Trainee on NIH Training Grant in Bioinformatics

Xiaomi Du

Program: Bioinformatics and Systems Biology

Degrees:

B.S., Biology, Caltech, 2016

Special Funding/Awards:

2019-20 Trainee on NIH Training Grant in Bioinformatics

Vicente Fajardo Rosas

Program: Bioinformatics and Systems Biology

Yi Fu

Program: Bioinformatics and Systems Biology

Advisor(s): Ruth Williams

Research Interests: Stochastic Processes, Epigenetics

Degrees:

B.S., Mathematics (Applied), University of California, San Diego, 2016
B.S., Biology with specialization in Bioinformatics, University of California, San Diego, 2016

Lia Gale

Program: Bioinformatics and Systems Biology

Special Funding/Awards:

2022-23 Trainee on NIH Training Grant in Bioinformatics

Aidan Glina

Program: Bioinformatics and Systems Biology

Special Funding/Awards:

2021-22 Trainee on NIH Training Grant in Bioinformatics

Karla P. Godinez-Macias

Program: Bioinformatics and Systems Biology

Advisor(s): Elizabeth Winzeler, Nathan E. Lewis

Degrees:

B.S., Computer Science, Universidad Autónoma de Baja California, 2016
M.S., Bioinformatics, The University of Texas at El Paso, 2019

Website

Cristian Gonzalez-Colin

Program: Bioinformatics and Systems Biology

Wilfredo Gonzalez-Rivera

Program: Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics

Caitlin Guccione

Program: Bioinformatics and Systems Biology

Advisor(s): Kit Curtius, Rob Knight

Research Interests: Cancer microbiome & mathematical modeling

Degrees:

B.S., Applied Mathematics, University of Rhode Island
B.A., Computer Science, University of Rhode Island
M.S., Applied Mathematics, University of Rhode Island

Special Funding/Awards:

2020-21 Trainee on NIH Training Grant in Bioinformatics

Website

Carlos Guzman

Program: Bioinformatics and Systems Biology

Advisor(s): Sven Heinz, Christopher Benner

Research Interests: Gene regulation, enhancer biology, chromatin regulation

Degrees:

B.S., Biology, University of Texas-Pan American, 2013
M.S., Biology, University of Texas-Pan American, 2015

Special Funding/Awards:

2017-19 Trainee on NIH Training Grant in Bioinformatics
Sloan Scholars Fellowship
Competitive EDGE Fellowship
2019 Ford Foundation Predoctoral Fellowship

Bhavya Harjai

Program: Bioinformatics and Systems Biology

Jennifer Havens

Program: Bioinformatics and Systems Biology

Advisor(s): Joel Wertheim

Research Interests: Virus evolution and phylogenetics, molecular epidemiology

Degrees:

B.S., Mathematical and Computational Biology, Harvey Mudd College, 2018

Website

Hsuan-Lin Her

Program: Bioinformatics and Systems Biology

Advisor(s): Gene Yeo

Research Interests: RNA-binding protein function

Degrees:

M.D., Taipei Medical University, 2019

Special Funding/Awards:

J Yang Foundation Fellowship

Website

Ryan Hillary

Program: Bioinformatics and Systems Biology

Advisor(s): Christopher Benner

Research Interests: Transcription Initiation and Regulation, Enhancer Biology, Gene Regulation

Degrees:

B.S., Bioinformatics, Brigham Young University, 2014

Pratibha Jagannatha

Program: Bioinformatics and Systems Biology

Advisor(s): Gene Yeo

Research Interests: Transcriptomics

Degrees:

B.S. Biomolecular Engineering

Special Funding/Awards:

2019-21 Trainee on NIH Training Grant in Bioinformatics

ARCS Scholar

Alex Jambor

Program: Bioinformatics and Systems Biology

Degrees:

B.S., Physics, Chemistry, University of Wisconsin-Madison, 2017

Jeff Jaureguy

Program: Bioinformatics and Systems Biology

Special Funding/Awards:

2020-21 Trainee on NIH Training Grant in Bioinformatics

2023-25 Human Genetics Scholar Award from the American Society of Human Genetics

Bojing Jia

Program: Bioinformatics and Systems Biology

Advisor(s): Bing Ren, Albert Hsiao

Research Interests: Spatial transcriptomics, computer vision

Degrees:

B.Sc., Quantitative Biology, McGill University, 2015

Special Funding/Awards:

2024 Siebel Scholar Award

Brian Johnson

Program: Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics

Special Funding/Awards:

2021-22 Trainee on National Library of Medicine (NLM) Training Grant Fellowship Program

Adam Jussila

Program: Bioinformatics and Systems Biology

Azhar Khandekar

Program: Bioinformatics and Systems Biology

Degrees:

B.S., Biochemistry, University of Washington, 2016

Special Funding/Awards:

National Cancer Institute's Cancer Research Training Award

Website

Jihoon Kim

Program: Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics

Adam Klie

Program: Bioinformatics and Systems Biology

Advisor(s): Hannah Carter

Degrees:

B.S., Bioengineering: Bioinformatics, University of California, San Diego, 2017

Special Funding/Awards:

2019-21 Trainee on NIH Training Grant in Bioinformatics

Emily Kobayashi

Program: Bioinformatics and Systems Biology

Degrees:

B.S., Bioinformatics, University of California, Santa Cruz, 2019

Special Funding/Awards:

2019-21 Trainee on NIH Training Grant in Bioinformatics

Zane Koch

Program: Bioinformatics and Systems Biology

Eric Kofman

Program: Bioinformatics and Systems Biology

Special Funding/Awards:

2019-21 Trainee on NIH Training Grant in Bioinformatics

Jonathan Lam

Program: Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics

Special Funding/Awards:

2020-21 Trainee on National Library of Medicine (NLM) Training Grant Fellowship Program

David Laub

Program: Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics

Special Funding/Awards:

2021-22 Trainee on National Library of Medicine (NLM) Training Grant Fellowship Program

Ko-Han Lee

Program: Bioinformatics and Systems Biology

Advisor(s): Hannah Carter

Research Interests: Cancer immunology

Degrees:

M.D., National Taiwan University, 2019

Adam Li

Program: Bioinformatics and Systems Biology

Clarence Mah

Program: Bioinformatics and Systems Biology

Advisor(s): Hannah Carter, Gene Yeo

Research Interests: Transcriptomics, RNA regulation, RNA localization, reproducible research

Degrees:

B.S., Bioengineering: Bioinformatics, University of California, San Diego 2016

Special Funding/Awards:

NSF Graduate Research Fellowship Program

UCSD Genetics Training Program

Website

Behrooz Mamandipoor

Program: Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics

Arya Massarat

Program: Bioinformatics and Systems Biology

Research Interests: Fine-mapping, Reproducibility

Degrees:

B.S., Mathematical and Computational Biology, Harvey Mudd College, 2020

Special Funding/Awards:

2020-21 Trainee on NIH Training Grant in Bioinformatics

NSF Graduate Research Fellowship

Daira Melendez

Program: Bioinformatics and Systems Biology

Douglas Meyer

Program: Bioinformatics and Systems Biology

Degrees:

B.S., Molecular Cell and Developmental Biology, UCLA, 2017

Alex Monell

Program: Bioinformatics and Systems Biology

Hannah Mummey

Program: Bioinformatics and Systems Biology

Advisor(s): Kyle Gaulton

Degrees:

B.S., Biochemistry, Wellesley College, 2020

Special Funding/Awards:

2020-21 Trainee on NIH Training Grant in Bioinformatics

Jacklyn Newsome

Program: Bioinformatics and Systems Biology

Jennifer Nguyen

Program: Bioinformatics and Systems Biology

Samuel Nkrumah

Program: Bioinformatics and Systems Biology

Degrees:

B.S., Biology, Fisk University, 2018

Special Funding/Awards:

UC-HBCU Initiative Fellowship

Adam Officer

Program: Bioinformatics and Systems Biology

Jonathan Pekar

Program: Bioinformatics and Systems Biology

Special Funding/Awards:

2023 Siebel Scholar

Daniela Perry

Program: Bioinformatics and Systems Biology

Degrees:

B.S., Statistics, Cornell University

Special Funding/Awards:

2021-23 Trainee on NIH Training Grant in Bioinformatics

Anh Pham

Program: Bioinformatics and Systems Biology

Special Funding/Awards:

2021-22 Sigma Delta Epsilon Tau Chapter Fellowship

Timothy Pham

Program: Bioinformatics and Systems Biology

Special Funding/Awards:

2020-21 Trainee on National Library of Medicine (NLM) Training Grant Fellowship Program

Avery Pong

Program: Bioinformatics and Systems Biology

Special Funding/Awards:

2022-23 Trainee on NIH Training Grant in Bioinformatics

Anna Qi

Program: Bioinformatics and Systems Biology

Special Funding/Awards:

2022-23 Trainee on NIH Training Grant in Bioinformatics

Gege Qian

Program: Bioinformatics and Systems Biology

Degrees:

B.S., Biochemistry and Cell Biology and Applied Math, University of California San Diego, 2019
M.S., Immunology, Harvard Medical School, 2021

Eleonora Rachtman

Program: Bioinformatics and Systems Biology

Gibraan Rahman

Program: Bioinformatics and Systems Biology

Joaquin Reyna

Program: Bioinformatics and Systems Biology

Degrees:

Bioengineering: Bioinformatics Bsc

Special Funding/Awards:

2018-20 Trainee on NIH Training Grant in Bioinformatics

Molly Sacks

Program: Bioinformatics and Systems Biology

Advisor(s): Jonathan Sebat

Degrees:

B.A., Applied Mathematics, Harvard University, 2022

Daniela Salgado Figueroa

Program: Bioinformatics and Systems Biology

Ali Sapci

Program: Bioinformatics and Systems Biology

Timothy Sears

Program: Bioinformatics and Systems Biology

Advisor(s): Hannah Carter

Research Interests: Cancer immunotherapy response prediction

Degrees:

B.S., Biochemistry and Molecular Biology, UC Santa Barbara, 2020

Special Funding/Awards:

2021-22 Trainee on NIH Training Grant in Bioinformatics

Website

Omar Shanta

Program: Bioinformatics and Systems Biology

Advisor(s): Jonathan Sebat

Degrees:

B.S., Electrical Engineering, University of California, Irvine, 2015
M.S., Electrical and Computer Engineering, University of California, San Diego, 2019

Sam Shen

Program: Bioinformatics and Systems Biology

Advisor(s): Wei Wang

Degrees:

B.ASc., Biomedical Engineering (Bioinformatics Track), University of British Columbia, 2021

Website

Severine Soltani

Program: Bioinformatics and Systems Biology

Advisor(s): Benjamin Smarr

Degrees:

B.S., Cognitive Science w/ Specialization in Machine Learning and Neural Computation, University of California, San Diego, 2020
Minor, Mathematics, University of California, San Diego, 2020

Special Funding/Awards:

2021-23 Trainee on NIH Training Grant in Bioinformatics

Jesse Solvason

Program: Bioinformatics and Systems Biology

Advisor(s): Emma Farley

Research Interests: Synthetic Biology, Transcriptional Regulation, Sequencing Based High-Throughput Screens

Degrees:

B.S. Molecular, Cellular, Developmental Biology; Minor in Chemistry

Website

Kimberly Spaulding

Program: Bioinformatics and Systems Biology

Special Funding/Awards:

2021-22 Trainee on NIH Training Grant in Bioinformatics

James Talwar

Program: Bioinformatics and Systems Biology

Juan Tibocha Bonilla

Program: Bioinformatics and Systems Biology

Felipe Vasquez Castro

Program: Bioinformatics and Systems Biology

Research Interests: Metabolomics, bile acids

Degrees:

B.S., Chemistry, Universidad de Costa Rica, 2020

Daniella Vo

Program: Bioinformatics and Systems Biology

Degrees:

B.S., Bioinformatics, University of California, San Diego, 2020

Special Funding/Awards:

2021-22 Trainee on NIH Training Grant in Bioinformatics

Website

Yotam Voskoboynik

Program: Bioinformatics and Systems Biology

Degrees:

B.S, Computer Science, University of California, Santa Cruz
B.A, Film and Digital Media, University of California, Santa Cruz

Xingzhao Wen

Program: Bioinformatics and Systems Biology

Advisor(s): Sheng Zhong

Research Interests: RNA interactome, Genome organization

Degrees:

B.S., Biomedical Engineering, Southeast University, China, 2018

Website

Sherlyn Weng

Program: Bioinformatics and Systems Biology

Alexander Wenzel

Program: Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics

Advisor(s): Jill Mesirov

Research Interests: Bulk and single cell RNA-seq algorithms development and analysis

Degrees:

B.S., Computer Science, Northwestern University, 2017

Special Funding/Awards:

Ruth L. Kirschstein Predoctoral Individual National Research Service Award (F31)

2017-20 Trainee on National Library of Medicine (NLM) Training Grant Fellowship Program

Cancer Cell Map Initiative: Cancer Systems Biology Training Program Award

Website

Sarah Wright

Program: Bioinformatics and Systems Biology

Advisor(s): Trey Ideker

Research Interests: Network genetics

Degrees:

M.Eng. Biomedical Engineering, Massachusetts Institute of Technology, 2016
B.S. Biological Engineering, Massachusetts Institute of Technology, 2017

Website

Cynthia Wu

Program: Bioinformatics and Systems Biology

Advisor(s): Melissa Gymrek, Alon Goren

Degrees:

B.S., Bioinformatics, University of California, San Diego, 2017
Minor, Computer Science, University of California, San Diego, 2017
M.S., Computer Science, University of California, San Diego, 2020

Heng Xu

Program: Bioinformatics and Systems Biology

Tianyao Xu

Program: Bioinformatics and Systems Biology

Advisor(s): Alon Goren, Christopher Benner

Degrees:

B.S., Bioengineering: Bioinformatics, University of California, San Diego, 2021
B.S., Mathematics (Applied), University of California, San Diego, 2021

Grace Yu

Program: Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics

Degrees:

B.S., Computer Science, Case Western Reserve University, 2021

Special Funding/Awards:

2022-23 Trainee on National Library of Medicine (NLM) Training Grant Fellowship Program

Nancy Yuan

Program: Bioinformatics and Systems Biology with a Specialization in Biomedical Informatics

Degrees:

M.S., Biology, UC San Diego, 2017

B.S., Biology, University of Texas at Austin, 2015

B.A., History, University of Texas at Austin, 2014

Special Funding/Awards:

2018-21 Trainee on National Library of Medicine (NLM) Training Grant Fellowship Program

2022-23 TRDRP (Tobacco-Related Disease Research Program) Predoctoral Research Fellowship

Jessica Zhou

Program: Bioinformatics and Systems Biology

Degrees:

B.S., Biomedical Engineering, University of Southern California, 2017

Special Funding/Awards:

2017-18 Trainee on NIH Training Grant in Bioinformatics
2019-20 Fulbright Study/Research Award

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Ammal Abbasi

Cemil Can Ali Marandi

Maria Luisa Amaral

Fatemeh Amrollahi

Ethan Armand

Erick Armingol

Jessica Au

Hratch Baghdassarian

Arjana Begzati

Dante Bolzan

Aaron Boussina

Lauryn Bruce

Yuwei Cao

Owen Chapman

Eduardo Charvel

Den Chen

Daisy Chen

Chien-Ju Chen

Apurva Chitre

Michael Cuoco

Jenny Dong

Xiaomi Du

Vicente Fajardo Rosas

Yi Fu

Lia Gale

Aidan Glina

Karla P. Godinez-Macias

Cristian Gonzalez-Colin

Wilfredo Gonzalez-Rivera

Caitlin Guccione

Carlos Guzman

Bhavya Harjai

Jennifer Havens

Hsuan-Lin Her

Ryan Hillary

Pratibha Jagannatha

Alex Jambor

Jeff Jaureguy

Bojing Jia

Brian Johnson

Adam Jussila

Azhar Khandekar

Jihoon Kim

Adam Klie

Emily Kobayashi

Zane Koch

Eric Kofman

Jonathan Lam

David Laub

Ko-Han Lee

Adam Li

Clarence Mah

Behrooz Mamandipoor

Arya Massarat

Daira Melendez

Douglas Meyer

Alex Monell

Hannah Mummey

Jacklyn Newsome

Jennifer Nguyen

Samuel Nkrumah

Adam Officer

Jonathan Pekar

Daniela Perry

Anh Pham

Timothy Pham

Avery Pong

Anna Qi

Gege Qian

Eleonora Rachtman

Gibraan Rahman

Joaquin Reyna

Molly Sacks

Daniela Salgado Figueroa

Ali Sapci

Timothy Sears

Omar Shanta

Sam Shen