Publications

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Students, please keep the Graduate Program Coordinator appraised of your new publications and any inaccuracies or omissions on this list. Most articles are indexed in PubMed; please provide the PubMed ID numbers (PMID) for your articles if available, to expedite the maintenance of this list. Please remember to acknowledge your grants in your papers, including the training grant if you were a recipient; see here for sample wording.

2003

Price ND, Papin JA, Schilling CH, Palsson BO. "Genome-scale microbial in silico models: the constraints-based approach." Trends Biotechnol. 2003;21(4):162-9. PubMed DOI
Price ND, Reed JL, Papin JA, Famili I, Palsson BO. "Analysis of metabolic capabilities using singular value decomposition of extreme pathway matrices." Biophys J. 2003;84(2 Pt 1):794-804. PubMed PMC DOI
Price ND, Reed JL, Papin JA, Wiback SJ, Palsson BO. "Network-based analysis of metabolic regulation in the human red blood cell." J Theor Biol. 2003;225(2):185-94. PubMed DOI

2002

Covert MW, Palsson BØ. "Transcriptional regulation in constraints-based metabolic models of Escherichia coli." J Biol Chem. 2002;277(31):28058-64. PubMed DOI
Edwards JS, Covert M, Palsson B. "Metabolic modelling of microbes: the flux-balance approach." Environ Microbiol. 2002;4(3):133-40. PubMed
Papin JA, Price ND, Edwards JS, Palsson B BØ. "The genome-scale metabolic extreme pathway structure in Haemophilus influenzae shows significant network redundancy." J Theor Biol. 2002;215(1):67-82. PubMed DOI
Papin JA, Price ND, Palsson BØ. "Extreme pathway lengths and reaction participation in genome-scale metabolic networks." Genome Res. 2002;12(12):1889-900. PubMed PMC DOI
Price ND, Famili I, Beard DA, Palsson BØ. "Extreme pathways and Kirchhoff's second law." Biophys J. 2002;83(5):2879-82. PubMed PMC DOI
Price ND, Papin JA, Palsson BØ. "Determination of redundancy and systems properties of the metabolic network of Helicobacter pylori using genome-scale extreme pathway analysis." Genome Res. 2002;12(5):760-9. PubMed PMC DOI
Schilling CH, Covert MW, Famili I, Church GM, Edwards JS, Palsson BO. "Genome-scale metabolic model of Helicobacter pylori 26695." J Bacteriol. 2002;184(16):4582-93. PubMed PMC DOI

2001

Covert MW, Schilling CH, Famili I, Edwards JS, Goryanin II, Selkov E, Palsson BO. "Metabolic modeling of microbial strains in silico." Trends Biochem Sci. 2001;26(3):179-86. PubMed
Covert MW, Schilling CH, Palsson B. "Regulation of gene expression in flux balance models of metabolism." J Theor Biol. 2001;213(1):73-88. PubMed DOI

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