Department News

May 10, 2011

Even the merest of microbes must be able to talk, to be able to interact with its environment and with others to not just survive, but to thrive. This cellular chatter comes in the form of signaling molecules and exchanged metabolites (molecules involved in the process of metabolism or living) that can have effects far larger than the organism itself. Humans, for example, rely upon thousands of products derived from microbially produced molecules, everything from antibiotics and food supplements to ingredients used in toothpaste and paint.

Remarkably, most of what’s known about how microbes communicate with each other is the result of indirect observation and measurements. There has been no general or informative technique for observing the manifold metabolic exchange and signaling interactions between microbes, their hosts and environments. Until now. In a paper published in the May 5 online issue of the journal Angewandte Chemie, researchers at UC San Diego and Scripps Institution of Oceanography report using a new form of imaging mass spectrometry to dramatically visualize multiplex microbial interactions.

Two coauthors are from the Bioinformatics & Sytems Biology Program: Prof. Pieter C. Dorrestein and Prof. Nuno Bandeira.

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July 27, 2012

Using a new assay method to study tumor cells, researchers at the University of California, San Diego School of Medicine and UC San Diego Moores Cancer Center have found evidence of clonal evolution in chronic lymphocytic leukemia (CLL). The assay method distinguishes features of leukemia cells that indicate whether the disease will be aggressive or slow-moving, a key factor in when and how patients are treated.

The findings are published in the July 26, 2012 First Edition online issue of Blood.

Coauthors include two members of the Bioinformatics program: alumnus Han-Yu Chuang, Ph.D. (lead author) and Prof. Trey Ideker.

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February 15, 2011

The Alfred P. Sloan Foundation has awarded research fellowships to seven young faculty members at the University of California, San Diego, the largest group from a single institution to be recognized this year. Recipients include Bioinformatics & Systems Biology faculty members Leor Weinberger and Gene Yeo.

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January 28, 2011

The California Institute for Regenerative Medicine (CIRM) has awarded three grants totaling nearly $5.8 million to researchers at the University of California, San Diego for development of innovative technologies designed to advance translational stem cell research. The grants are part of $32 million in Tools and Technology Awards II awarded to 19 projects at 10 California institutions that were announced by CIRM today.  The grants were awarded to Lawrence Goldstein, Karl Willert, and Shu Chien.

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October 22, 2010

Researchers at the University of California, San Diego School of Medicine, led by Lucila Ohno-Machado, MD, PhD, chief of the Division of Biomedical Informatics in the Department of Medicine, have received two federal grants totaling more than $25 million to develop new ways to gather, analyze, use and share vast, ever-increasing amounts of biomedical information.

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September 18, 2010

Philip E. Bourne, a computational biologist and professor with the University of California, San Diego, is this year’s recipient of Microsoft’s Jim Gray eScience Award, for his contributions to data-intensive computing. “Phil's contributions to open access in bioinformatics and computational biology are legion, and are exactly the sort of groundbreaking accomplishments in data-intensive science that we celebrate with the Jim Gray Award,” said Tony Hey, corporate vice president of the External Research Division of Microsoft Research, in a corporate blog this week following the announcement. “In particular, Phil's role as the founding editor-in-chief of the open-access journal PLoS Computational Biology has significantly advanced open access in mathematical and computational biology.”

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September 21, 2010

The National Institute of General Medical Sciences has awarded $15.4 million to the University of California, San Diego, to establish a center for the study of systems biology, a relatively new branch of science that maps interactions between regulatory molecules in order to understand how complex biological systems work.

The UC San Diego Center for Systems Biology will focus on interactions involved in cells’ responses to stress, said director Alexander Hoffmann, professor of chemistry and biochemistry in the Division of Physical Sciences.

Researchers at the new center will analyze interactions among all of the genes and proteins within a cell in response to potentially harmful changes in the environment, then test the functions of specific genetic “circuits” involved in the response by recreating them in isolation using synthesized genes.

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June 7, 2010

Shankar Subramaniam has been named a Distinguished Scientist at the San Diego Supercomputer Center (SDSC), to assist the Organized Research Unit of the University of California, San Diego, in identifying new opportunities and solutions in the area of bioinformatics.

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May 27, 2010

A total of $375,000 has been awarded to the 2010-2011 Hellman Faculty Fellows at the University of California, San Diego. The funds awarded will support 30 faculty members in their scholarly work as they strive for tenure with the university, including Dr. Amy Kiger in cell and developmental biology.

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May 17, 2010

Lucila Ohno-Machado, MD, PhD, FACMI and founding chief of the division of biomedical informatics at the University of California, San Diego has been named editor of the American Medical Informatics Association’s journal, JAMIA.

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